# harpy-vitessce

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<div align="center">
  <img class="dark-light" src="_static/logo.png" alt="harpy-vitessce logo" width="220" />
  <p><strong><span style="font-size:1.8em;">Interactive Vitessce visualizations for Harpy workflows.</span></strong></p>
</div>

> Build interactive views for spatial data and share reproducible Vitessce
> configurations from Harpy-compatible datasets.

## Example

Example visualization for Visium HD can be found
[here](https://vib-data-core.github.io/vitessce/?url=spatial-hackathon-public/sparrow/public_datasets/transcriptomics/visium_hd/config_visium_hd_benchmark_s3_10_2_26.json).

```{eval-rst}
.. card:: Quick Start
    :link: quickstart
    :link-type: doc

    Get up and running with a minimal end-to-end example.

.. card:: Visium HD Tutorials

    - :doc:`Visualize as bins <tutorials/visium_hd/visium_hd_bins_from_spatialdata>`
    - :doc:`Visualize as spots <tutorials/visium_hd/visium_hd_spots>`

.. card:: Proteomics Usage
    :link: tutorials/proteomics/spatialdata_blobs
    :link-type: doc

    Create Vitessce configurations for proteomics datasets.

.. card:: Source Repository
    :link: https://github.com/vibspatial/harpy_vitessce
    :link-type: url

    Report issues and follow development.
```

```{toctree}
:hidden: true
:maxdepth: 1

quickstart
tutorials/index
```